format-version: 1.0 date: 30:05:2007 11:46 saved-by: jdetras auto-generated-by: OBO-Edit 1.101 default-namespace: FORAGES remark: Created by Jeffrey Detras on May 30, 2007 for the PO/TO Workshop. [Term] id: GCP_342.0000000 name: CGIAR Forages Trait Ontology [Term] id: GCP_342.0000001 name: ForageLegumeDescriptor is_a: GCP_342.0000000 ! CGIAR Forages Trait Ontology [Term] id: GCP_342.0000003 name: plant data comment: Some descriptors may be used for several species, whereas others are special for one species only. + indicates that the descriptor could be used for this species. 0 indicates that the descriptor is not recommended. Suggestions for example varieties are included. is_a: GCP_342.0000001 ! ForageLegumeDescriptor [Term] id: GCP_342.0000004 name: vegetative leaf is_a: GCP_342.0000003 ! plant data [Term] id: GCP_342.0000005 name: length of central leaflet at flowering comment: + + + + + is_a: GCP_342.0000004 ! vegetative leaf [Term] id: GCP_342.0000006 name: width of central leaflet at flowering comment: + + + + + is_a: GCP_342.0000004 ! vegetative leaf [Term] id: GCP_342.0000007 name: shape of leaf comment: 3(=elongated), 5(=ovate) and 7(=round) 0 + + 0 0 is_a: GCP_342.0000004 ! vegetative leaf [Term] id: GCP_342.0000008 name: leaf marks comment: percentage of plant showing V-leaf marks + + 0 0 0 is_a: GCP_342.0000004 ! vegetative leaf [Term] id: GCP_342.0000009 name: length of petiole comment: + 0 0 0 0 is_a: GCP_342.0000004 ! vegetative leaf [Term] id: GCP_342.0000010 name: thickness of petiole comment: + 0 0 0 0 is_a: GCP_342.0000004 ! vegetative leaf [Term] id: GCP_342.0000011 name: percent cyanogenic plants comment: (Percentage positive plants to HCN picrate paper test. It is recommended to test 60 individual plants) + 0 0 0 0 is_a: GCP_342.0000004 ! vegetative leaf [Term] id: GCP_342.0000012 name: vegetative stem is_a: GCP_342.0000003 ! plant data [Term] id: GCP_342.0000013 name: vegetative growth habit comment: Expressed as a mean angle of the shoots from vertical scale.\n1 (=very erect) to 9(=very prostrate) 0 + + 0 0 is_a: GCP_342.0000012 ! vegetative stem [Term] id: GCP_342.0000014 name: length at flowering comment: 1(=very short) to 9(=very long) 0 + + + 0 is_a: GCP_342.0000012 ! vegetative stem [Term] id: GCP_342.0000015 name: thickness of stolon comment: + 0 0 0 0 is_a: GCP_342.0000012 ! vegetative stem [Term] id: GCP_342.0000016 name: internode length comment: 1(= very short)to 9(= very long) + 0 0 0 0 is_a: GCP_342.0000012 ! vegetative stem [Term] id: GCP_342.0000017 name: inflorescence and fruit comment: 4.2.3. 4.3.2. \n \n3. Thin Nora 1. Very early Podkova \n5. Medium Blanca 3. Early Milkanova1) \n7. Thick Crau 5. Medium S.1842)\n 7. Kate Gigant \n 9. Very late Ladino \n 1) Milkanova & von Kamekes\n2) S. 184 & Huia \n\n White clover Red clover Lucerne Alsike clover Birdsfoot-trefoil is_a: GCP_342.0000003 ! plant data [Term] id: GCP_342.0000018 name: tendency to form inflorescences in sowing year comment: To be assessed on plants not exposed to short day and/or low temperature vernalisation.\n1(= very low) to 9(= very high) + + + + + is_a: GCP_342.0000017 ! inflorescence and fruit [Term] id: GCP_342.0000019 name: date of flowering comment: Date when 50% of plants first show petal colour development on an inflorescence.\n1(= very early) to 9(= very late) + + + + + is_a: GCP_342.0000017 ! inflorescence and fruit [Term] id: GCP_342.0000020 name: colour of flower comment: 3. Light red\n7. Dark red 0 + 0 0 0 is_a: GCP_342.0000017 ! inflorescence and fruit [Term] id: GCP_342.0000021 name: percentage of each colour is_a: GCP_342.0000017 ! inflorescence and fruit [Term] id: GCP_342.0000022 name: white comment: 0 0 + 0 0 is_a: GCP_342.0000021 ! percentage of each colour [Term] id: GCP_342.0000023 name: yellow comment: 0 0 + 0 0 is_a: GCP_342.0000021 ! percentage of each colour [Term] id: GCP_342.0000024 name: light blue-violet comment: 0 0 + 0 0 is_a: GCP_342.0000021 ! percentage of each colour [Term] id: GCP_342.0000025 name: dark blue-violet comment: 0 0 + 0 0 is_a: GCP_342.0000021 ! percentage of each colour [Term] id: GCP_342.0000026 name: red-violet comment: 0 0 + 0 0 is_a: GCP_342.0000021 ! percentage of each colour [Term] id: GCP_342.0000027 name: variegation comment: Percentage of plants with variegated flowers. 0 0 + 0 0 is_a: GCP_342.0000017 ! inflorescence and fruit [Term] id: GCP_342.0000028 name: colour of seed coat is_a: GCP_342.0000017 ! inflorescence and fruit [Term] id: GCP_342.0000057 name: preliminary evaluation is_a: GCP_342.0000003 ! plant data [Term] id: GCP_342.0000058 name: winter damage - first winter comment: Percent of plant damaged-adjusted to control. is_a: GCP_342.0000057 ! preliminary evaluation [Term] id: GCP_342.0000061 name: WinterDamage-FirstWinterCode is_a: GCP_342.0000058 ! winter damage - first winter [Term] id: GCP_342.0000062 name: yields of individual assessments comment: Spring yield-eye scores-4 weeks after end of winter period. is_a: GCP_342.0000057 ! preliminary evaluation [Term] id: GCP_342.0000063 name: control variety name is_a: GCP_342.0000062 ! yields of individual assessments [Term] id: GCP_342.0000064 name: estimated yield relative to adjusted designated control comment: 1(= very low) to 9(= very high) is_a: GCP_342.0000062 ! yields of individual assessments [Term] id: GCP_342.0000065 name: summer yields comment: Eye scores at time of flowering. Yield relative to adjusted designated control.\n1(= very low) to 9(= very high) is_a: GCP_342.0000062 ! yields of individual assessments [Term] id: GCP_342.0000066 name: autumn yields comment: Eye scores same as summer yields. is_a: GCP_342.0000062 ! yields of individual assessments [Term] id: GCP_342.0000067 name: profuseness of flowering comment: Scored at full bloom. 1(= sparse) to 9(= very profuse) is_a: GCP_342.0000057 ! preliminary evaluation [Term] id: GCP_342.0000068 name: plant data (fields plots) comment: White clover Red clover Lucerne Alsike clover Birdsfoot-trefoil is_a: GCP_342.0000001 ! ForageLegumeDescriptor [Term] id: GCP_342.0000069 name: vegetative is_a: GCP_342.0000068 ! plant data (fields plots) [Term] id: GCP_342.0000070 name: perenniality comment: Number of years.\n+ + + + + is_a: GCP_342.0000069 ! vegetative [Term] id: GCP_342.0000071 name: yield of dry matter comment: 100 kilos/ha.\n+ + + + + is_a: GCP_342.0000069 ! vegetative [Term] id: GCP_342.0000072 name: first harvest year is_a: GCP_342.0000071 ! yield of dry matter [Term] id: GCP_342.0000073 name: second harvest year is_a: GCP_342.0000071 ! yield of dry matter [Term] id: GCP_342.0000074 name: third harvest year is_a: GCP_342.0000071 ! yield of dry matter [Term] id: GCP_342.0000075 name: average of years is_a: GCP_342.0000071 ! yield of dry matter [Term] id: GCP_342.0000076 name: crude protein content comment: Percentage to nearest whole number.\n+ + + + + is_a: GCP_342.0000069 ! vegetative [Term] id: GCP_342.0000077 name: crude fibre content comment: Percentage to nearest whole number. 0 0 + 0 + is_a: GCP_342.0000069 ! vegetative [Term] id: GCP_342.0000078 name: control variety comment: + + + + + is_a: GCP_342.0000069 ! vegetative [Term] id: GCP_342.0000079 name: yield of dry matter is_a: GCP_342.0000078 ! control variety [Term] id: GCP_342.0000080 name: crude protein is_a: GCP_342.0000078 ! control variety [Term] id: GCP_342.0000081 name: crude fiber is_a: GCP_342.0000078 ! control variety [Term] id: GCP_342.0000082 name: stress susceptibility comment: Based on a 1-9 scale where is_a: GCP_342.0000001 ! ForageLegumeDescriptor [Term] id: GCP_342.0000089 name: low temperature is_a: GCP_342.0000082 ! stress susceptibility [Term] id: GCP_342.0000090 name: high temperature is_a: GCP_342.0000082 ! stress susceptibility [Term] id: GCP_342.0000091 name: drought is_a: GCP_342.0000082 ! stress susceptibility [Term] id: GCP_342.0000092 name: high soil moisture is_a: GCP_342.0000082 ! stress susceptibility [Term] id: GCP_342.0000093 name: pest and disease susceptibility comment: Based on a 1-9 scale. is_a: GCP_342.0000001 ! ForageLegumeDescriptor [Term] id: GCP_342.0000099 name: Sclerotinia trifoliorum comment: + + 0 0 + is_a: GCP_342.0000093 ! pest and disease susceptibility [Term] id: GCP_342.0000100 name: Ditylenchus dipsaci comment: + + + 0 0 is_a: GCP_342.0000093 ! pest and disease susceptibility [Term] id: GCP_342.0000101 name: Verticillium albo-atrum comment: 0 0 + 0 0 is_a: GCP_342.0000093 ! pest and disease susceptibility [Term] id: GCP_342.0000102 name: Eryshiphe polygoni comment: 0 + 0 0 0 is_a: GCP_342.0000093 ! pest and disease susceptibility [Term] id: GCP_342.0000104 name: ForageGrassDescriptor is_a: GCP_342.0000000 ! CGIAR Forages Trait Ontology [Term] id: GCP_342.0000106 name: plant data is_a: GCP_342.0000104 ! ForageGrassDescriptor [Term] id: GCP_342.0000107 name: vegetative is_a: GCP_342.0000106 ! plant data [Term] id: GCP_342.0000108 name: tillering capacity of juvenile plant comment: + adjust to control. Count number of tillers while still in boxes, usually easier to accomplish 2-3 days after cutting back. Scale 1-9. is_a: GCP_342.0000107 ! vegetative [Term] id: GCP_342.0000112 name: vegetative growth habit comment: Expressed as a mean angle of the tillers from the vertical, in autumn of establishment year or before tiller elongation in the following spring. Scale 1-9. is_a: GCP_342.0000107 ! vegetative [Term] id: GCP_342.0000116 name: leaf width (non-reproductive) comment: use example varieties to categorize. To be estimated by eye in the autumn. is_a: GCP_342.0000107 ! vegetative [Term] id: GCP_342.0000121 name: estimates of herbage yield comment: Adjust to control. is_a: GCP_342.0000107 ! vegetative [Term] id: GCP_342.0000125 name: early spring growth is_a: GCP_342.0000121 ! estimates of herbage yield [Term] id: GCP_342.0000126 name: yield at ca 50% inflorescence emergence plus 1 to 2 weeks is_a: GCP_342.0000121 ! estimates of herbage yield [Term] id: GCP_342.0000127 name: subsequent assessments is_a: GCP_342.0000121 ! estimates of herbage yield [Term] id: GCP_342.0000128 name: winter damage comment: Adjust to control. is_a: GCP_342.0000121 ! estimates of herbage yield [Term] id: GCP_342.0000132 name: inflorescence is_a: GCP_342.0000106 ! plant data [Term] id: GCP_342.0000133 name: tendency to form inflorescences in sowing year comment: Adjust to control. To be assessed on plants sown in the spring, not exposed to short day and/or low temperature vernalization. is_a: GCP_342.0000132 ! inflorescence [Term] id: GCP_342.0000140 name: time of 50% inflorescence emergence comment: * use example varieties to categorize (see Appendix I). The time in the year following establishment when 50% of the spaced plants have reached inflorescence emergence. A plant has reached inflorescence emergence when the top floret of three inflorescences has emerged past the insertion of the flag leaf. is_a: GCP_342.0000132 ! inflorescence [Term] id: GCP_342.0000147 name: uniformity of time of inflorescence emergence comment: Adjust to control. is_a: GCP_342.0000132 ! inflorescence [Term] id: GCP_342.0000152 name: habit at ear emergence comment: Scale 1-9. is_a: GCP_342.0000132 ! inflorescence [Term] id: GCP_342.0000156 name: abundance of inflorescences comment: Adjust to control. Eye estimates of number of inflorescences per plant at maturity. is_a: GCP_342.0000132 ! inflorescence [Term] id: GCP_342.0000163 name: vegetative comment: Productivity - Herbage dry matter production (see Appendix II).\n\nD.O.M.D. assessed on conservation cut 6.1.8. Expressed as units of D.O.M.D. higher (+) or lower (-) than appropriate control is_a: GCP_342.0000182 ! further evaluation [Term] id: GCP_342.0000164 name: seasonal is_a: GCP_342.0000163 ! vegetative [Term] id: GCP_342.0000165 name: establishment year yield is_a: GCP_342.0000164 ! seasonal [Term] id: GCP_342.0000166 name: early spring yield is_a: GCP_342.0000164 ! seasonal [Term] id: GCP_342.0000167 name: spring yield is_a: GCP_342.0000164 ! seasonal [Term] id: GCP_342.0000168 name: early summer yield is_a: GCP_342.0000164 ! seasonal [Term] id: GCP_342.0000169 name: late summer yield is_a: GCP_342.0000164 ! seasonal [Term] id: GCP_342.0000170 name: autumn yield is_a: GCP_342.0000164 ! seasonal [Term] id: GCP_342.0000171 name: total seasonal yield is_a: GCP_342.0000164 ! seasonal [Term] id: GCP_342.0000172 name: conservation or aftermath is_a: GCP_342.0000163 ! vegetative [Term] id: GCP_342.0000173 name: conservation yield is_a: GCP_342.0000172 ! conservation or aftermath [Term] id: GCP_342.0000174 name: first regrowth yield is_a: GCP_342.0000172 ! conservation or aftermath [Term] id: GCP_342.0000175 name: second regrowth yield is_a: GCP_342.0000172 ! conservation or aftermath [Term] id: GCP_342.0000176 name: subsequent regrowth yield is_a: GCP_342.0000172 ! conservation or aftermath [Term] id: GCP_342.0000177 name: total conservation yield is_a: GCP_342.0000172 ! conservation or aftermath [Term] id: GCP_342.0000178 name: digestibility is_a: GCP_342.0000172 ! conservation or aftermath [Term] id: GCP_342.0000179 name: juvenile plant yield comment: Assessed on seedlings grown in glasshouse prior to transplanting in the field as single plants. Data reported as for productivity (see Appendix II). is_a: GCP_342.0000163 ! vegetative [Term] id: GCP_342.0000180 name: persistency comment: Assessed on swards, usually at the completion of yield estimation. Eye estimate of ground cover of sown species. Data reported by adjustment to control (see Appendix I). is_a: GCP_342.0000163 ! vegetative [Term] id: GCP_342.0000181 name: inflorescence is_a: GCP_342.0000182 ! further evaluation [Term] id: GCP_342.0000182 name: further evaluation is_a: GCP_342.0000104 ! ForageGrassDescriptor [Term] id: GCP_342.0000183 name: mean date of inflorescence emergence comment: Record number of days after January 1 (= 1) when each plant has reached inflorescence emergence. Expressed as number of days earlier (+) or later (-) than appropriate maturity-group control. is_a: GCP_342.0000181 ! inflorescence [Term] id: GCP_342.0000184 name: uniformity of inflorescence emergence comment: Coefficient of variation expressed relative to appropriate control. is_a: GCP_342.0000181 ! inflorescence [Term] id: GCP_342.0000185 name: leaf width (reproductive) comment: (see Appendix II). Flag leaf width measured at inflorescence emergence. is_a: GCP_342.0000181 ! inflorescence [Term] id: GCP_342.0000189 name: leaf length (reproductive) comment: (see Appendix II). Flag leaf length measured at inflorescence emergence. is_a: GCP_342.0000181 ! inflorescence [Term] id: GCP_342.0000193 name: length of longest culm comment: (including inflorescence) (see Appendix II). Length measured when culm is fully elongated. is_a: GCP_342.0000181 ! inflorescence [Term] id: GCP_342.0000197 name: seasonal inflorescence production comment: (see Appendix II). Estimate of inflorescence production on sward productivity trial at each seasonal and regrowth cut. is_a: GCP_342.0000181 ! inflorescence [Term] id: GCP_342.0000201 name: stress susceptibility comment: (controlled environment tests) (see Appendix II). Use 1-9 scale relative to adjusted control.\n\n\n (see Appendix I) is_a: GCP_342.0000104 ! ForageGrassDescriptor [Term] id: GCP_342.0000202 name: low temperature is_a: GCP_342.0000201 ! stress susceptibility [Term] id: GCP_342.0000203 name: high temperature is_a: GCP_342.0000201 ! stress susceptibility [Term] id: GCP_342.0000204 name: drought is_a: GCP_342.0000201 ! stress susceptibility [Term] id: GCP_342.0000205 name: high soil moisture comment: State method used (specify in the NOTES descriptor, 11). is_a: GCP_342.0000201 ! stress susceptibility [Term] id: GCP_342.0000209 name: pest and disease susceptiblity comment: (see Appendix II). Use 1-9 scale with example variety(ies) is_a: GCP_342.0000104 ! ForageGrassDescriptor [Term] id: GCP_342.0000213 name: pests is_a: GCP_342.0000209 ! pest and disease susceptiblity [Term] id: GCP_342.0000214 name: fruit fly comment: Oscinella spp. is_a: GCP_342.0000213 ! pests [Term] id: GCP_342.0000215 name: etc. is_a: GCP_342.0000213 ! pests [Term] id: GCP_342.0000216 name: fungi is_a: GCP_342.0000209 ! pest and disease susceptiblity [Term] id: GCP_342.0000217 name: crown rust comment: Causal agent: Puccinia coronata is_a: GCP_342.0000216 ! fungi [Term] id: GCP_342.0000218 name: Drechslera dictyoides comment: Causal agent of leaf spot. is_a: GCP_342.0000219 ! leaf spot [Term] id: GCP_342.0000219 name: leaf spot comment: Causal agent: Rhynchosporium secalis is_a: GCP_342.0000216 ! fungi [Term] id: GCP_342.0000220 name: etc. is_a: GCP_342.0000216 ! fungi [Term] id: GCP_342.0000221 name: Puccinia coronata comment: Causal agent of crown rust. is_a: GCP_342.0000217 ! crown rust [Term] id: GCP_342.0000222 name: Rhynchosporium secalis comment: Causal agent of leaf spot. is_a: GCP_342.0000219 ! leaf spot [Term] id: GCP_342.0000223 name: bacteria is_a: GCP_342.0000209 ! pest and disease susceptiblity [Term] id: GCP_342.0000224 name: viruses is_a: GCP_342.0000209 ! pest and disease susceptiblity [Term] id: GCP_342.0000225 name: alloenzymes comment: (see Appendix II). is_a: GCP_342.0000104 ! ForageGrassDescriptor [Term] id: GCP_342.0000226 name: chromosome number comment: Record somatic chromosome number. is_a: GCP_342.0000104 ! ForageGrassDescriptor [Term] id: GCP_342.0000227 name: notes is_a: GCP_342.0000104 ! ForageGrassDescriptor [Term] id: GCP_342.0000228 name: appendix comment: APPENDIX I. Use of control varieties and data adjustment (for Section 4)\n\nSection 4\n\n1. Adjustment to Control\n\nAdjustment to control values is considered necessary for the majority of descriptors as quantitative data and eye estimates cannot be compared directly when obtained from different environments and/or different years.\n\nFor those descriptors marked "+" in the list, a control with high expression of that character will be nominated. Agreement on particular controls is desirable although it is accepted that different controls will be required in widely different environments.\n\nPopulation means, either eye estimates or metric measurements are expressed as percentages relative to the nominated control (= 100). A 1-9 coding (1 = very low to 9 = very high) is then assigned to the adjusted values, viz:\n\nCode % relative to control (= 100)\n1 0 - 15.5\n2 15.6 - 31.0\n3 31.1 - 46.5\n4 46.6 - 62.0\n5 62.1 - 77.5\n6 77.6 - 93.0\n7 93.1 - 108.5\n8 108.6 - 124.0\n9 > 124.0 \n\n2. Example varieties\n\nFor those descriptors marked "*" the use of example or delineating varieties is suggested.\n\n4.2.2.1 Time of 50% inflorescence emergence\n\nRaw data will be obtained as number of days after 1 January (= 1) when 50% of the plants have emerged.\n\nCategorization into a 1-9 scale (maturity groups) can either be done using example varieties (UPOv1) or delineating varieties (NIAB2). Characterization in a particular country would follow the system adopted by the registration authority of that country.\n\n1International Union for the Protection of New Varieties of Plants\n2National Institute of Agricultural Botany, UK\n\n4.1.3 Leaf width (non-reproductive)\n\nThe use of example varieties are suggested as an aid to categorization for this character.\n\n3. Evaluation environment and type of planting\n\nThese descriptors are intended to be specific for descriptors in 4 CHARACTERIZATION AND PRELIMINARY EVALUATION and 6 FURTHER CHARACTERIZATION AND EVALUATION, the majority of which are likely to be spaced single plants in the field (4) and field swards (6), respectively. However it is possible in (4) and likely in (6) that data for some descriptors will be obtained from a different type of environment/planting. For example 6.1.14 is likely to be obtained in a glasshouse environment and 6.2.1-6.2.5 from spaced single plants. Any such change must be recorded and related to the descriptor.\n\n4. Name or designation of control variety\n\nWhen a control variety is used to obtain relative data the name of the control will be entered in 3.10 and 5.10. In the event of a change of control for any descriptor this must be recorded and related to the descriptor.\n\n\nAPPENDIX II. Use of control varieties and data adjustment (for Section 6)\n\nSection 6\n\n1. Adjustment to control\n\n6.1.1-6.1.12, 6.1.14 Productivity\n\nProductivity would normally be evaluated in swards by sequential cutting and weighing, exceptionally by eye estimation.\n\nData would be reported as percentages relative to the appropriate maturity-group control for the country of evaluation.\n\nSeasonal yields\n\nThe duration of each seasonal period will need to be defined for each country. As an example the system in use in the UK is as follows - all dates are approximate.\n\nEarly spring: Growth up to 10 April after a clearing cut at the end of February\n \nSpring: Growth up to 1 May\n \nEarly summer: Growth between 1 May and 1 July\n \nLate summer: Growth between 1 July and 1 September\n \nAutumn: Growth between 1 September and 1 November\n\nConservation/Aftermath yields\n\nConservation yield: Approximately 1-2 weeks after inflorescence emergence\n \nFirst regrowth: 6 weeks after conservation cut (4 weeks for Lolium multiflorum and Dactylis glomerata)\n \nSecond regrowth: 6 weeks after first regrowth cut (4 weeks for L. multiflorum and D. glomerata)\n \nSubsequent regrowth: The sum of all subsequent cuts taken in September and October\n\n2. Example varieties\n\n6.2.3-6.2.5 Leaf width, leaf length and length of longest culm\n\nExample varieties are suggested as an aid to categorization. UPOV list example varieties for certain characters in Lolium perenne, L. multiflorum. There will be a need for identification of example varieties for other species.\n\n3. 6.2.6 Seasonal inflorescence production\n\nIt is suggested that the following categorization is used as a guide to classification on the 1-9 scale\n\n1 occasional inflorescences\n3 10-50 inflorescences/m2\n5 51-100 inflorescences/m2\n7 101-200 inflorescences/m2\n9 >200 inflorescences/m2\n\n4. Stress, pest and disease susceptibility and alloenzymes\n\nDescriptors in these categories might not be evaluated under the conditions or use the same controls as recorded in 5 SITE DATA for further evaluation. In this event any change must be recorded and related to the descriptor. is_a: GCP_342.0000104 ! ForageGrassDescriptor