format-version: 1.2
date: 30:05:2007 10:23
saved-by: jdetras
auto-generated-by: OBO-Edit 1.101
default-namespace: BARLEY
remark: created by Jeffrey Detras on May 30, 2007 for the PO/TO workshop.

[Term]
id: GCP_323.0000000
name: CGIAR Barley Trait Ontology

[Term]
id: GCP_323.0000001
name: BarleyDescriptor
is_a: GCP_323.0000000 ! CGIAR Barley Trait Ontology

[Term]
id: GCP_323.0000002
name: plant descriptors further characterization and evaluation
comment: null
is_a: GCP_323.0000001 ! BarleyDescriptor

[Term]
id: GCP_323.0000003
name: seed further characterization and evaluation
comment: null
is_a: GCP_323.0000002 ! plant descriptors further characterization and evaluation

[Term]
id: GCP_323.0000004
name: lysine per protein ratio
comment: Percentage lysine per unit of protein (absolute), [%]
is_a: GCP_323.0000003 ! seed further characterization and evaluation

[Term]
id: GCP_323.0000005
name: protein content
comment: Measured as percentage dry weight (seed moisture equal to or less than 12%). Indicating the conversion factors used as either N x 6.25 or N x 5.6,  [%]
is_a: GCP_323.0000003 ! seed further characterization and evaluation

[Term]
id: GCP_323.0000006
name: specific gravity
comment: Mass of harvested grain of a known volume, (Test Weight) [kg m3]
is_a: GCP_323.0000003 ! seed further characterization and evaluation

[Term]
id: GCP_323.0000007
name: alloenzyme composition and zymotype
comment: null
is_a: GCP_323.0000001 ! BarleyDescriptor

[Term]
id: GCP_323.0000008
name: molecular markers
comment: null
is_a: GCP_323.0000007 ! alloenzyme composition and zymotype

[Term]
id: GCP_323.0000009
name: specific amplicon polymorphism
comment: (SAP)
is_a: GCP_323.0000008 ! molecular markers

[Term]
id: GCP_323.0000010
name: others
comment: (specify)
is_a: GCP_323.0000008 ! molecular markers

[Term]
id: GCP_323.0000011
name: restriction fragment length polymorphism
comment: (RFLP)
is_a: GCP_323.0000008 ! molecular markers

[Term]
id: GCP_323.0000012
name: random amplified polymorphic DNA
comment: (RAPD)
is_a: GCP_323.0000008 ! molecular markers

[Term]
id: GCP_323.0000013
name: biochemical markers
comment: null
is_a: GCP_323.0000007 ! alloenzyme composition and zymotype

[Term]
id: GCP_323.0000014
name: isozyme
comment: Gene symbols based on nomenclature recommended by the International Barley Genetic Symposium
is_a: GCP_323.0000013 ! biochemical markers

[Term]
id: GCP_323.0000015
name: others
comment: (specify)
is_a: GCP_323.0000013 ! biochemical markers

[Term]
id: GCP_323.0000016
name: plant descriptors characterization and preliminary evaluation
comment: null
is_a: GCP_323.0000001 ! BarleyDescriptor

[Term]
id: GCP_323.0000017
name: seed characterization and preliminary evaluation
comment: null
is_a: GCP_323.0000016 ! plant descriptors characterization and preliminary evaluation

[Term]
id: GCP_323.0000018
name: graincolour
comment: (pericarp)
is_a: GCP_323.0000017 ! seed characterization and preliminary evaluation

[Term]
id: GCP_323.0000019
name: lemma colour
comment: null
is_a: GCP_323.0000017 ! seed characterization and preliminary evaluation

[Term]
id: GCP_323.0000020
name: kernel plumpness
comment: Percentage of kernels remaining on a 2.38 mm slotted screen, [%]
is_a: GCP_323.0000017 ! seed characterization and preliminary evaluation

[Term]
id: GCP_323.0000021
name: 1000-kernel weight Tel
comment: (Even though this trait is environment dependent, most growouts will occur in favorable environments). Converted from weighing a lot of 250 kernels or more
is_a: GCP_323.0000017 ! seed characterization and preliminary evaluation

[Term]
id: GCP_323.0000022
name: kernel covering
comment: Whether or not the lemma and palea adhere to the caryopsis
is_a: GCP_323.0000017 ! seed characterization and preliminary evaluation

[Term]
id: GCP_323.0000023
name: aleurone colour
comment: (Although this trait is difficult to observe, it is  used for market type classification in several countries)
is_a: GCP_323.0000017 ! seed characterization and preliminary evaluation

[Term]
id: GCP_323.0000024
name: vegetative characterization and preliminary evaluation
comment: null
is_a: GCP_323.0000016 ! plant descriptors characterization and preliminary evaluation

[Term]
id: GCP_323.0000025
name: stem pigmentation
comment: (immature)
is_a: GCP_323.0000024 ! vegetative characterization and preliminary evaluation

[Term]
id: GCP_323.0000026
name: auricle pigmentation
comment: (Very subject to environmental factors)
is_a: GCP_323.0000024 ! vegetative characterization and preliminary evaluation

[Term]
id: GCP_323.0000027
name: plant height
comment: At maturity, measured from the ground level to the top of spike excluding awns,  [cm]
is_a: GCP_323.0000024 ! vegetative characterization and preliminary evaluation

[Term]
id: GCP_323.0000028
name: growth class
comment: (seasonality)
is_a: GCP_323.0000024 ! vegetative characterization and preliminary evaluation

[Term]
id: GCP_323.0000029
name: growth habit
comment: null
is_a: GCP_323.0000024 ! vegetative characterization and preliminary evaluation

[Term]
id: GCP_323.0000030
name: inflorescence or fruit characterization and preliminary evaluation
comment: null
is_a: GCP_323.0000016 ! plant descriptors characterization and preliminary evaluation

[Term]
id: GCP_323.0000031
name: photoperiod sensitivity
comment: null
is_a: GCP_323.0000030 ! inflorescence or fruit characterization and preliminary evaluation

[Term]
id: GCP_323.0000032
name: row number or lateral florets
comment: null
is_a: GCP_323.0000030 ! inflorescence or fruit characterization and preliminary evaluation

[Term]
id: GCP_323.0000033
name: spike density
comment: null
is_a: GCP_323.0000030 ! inflorescence or fruit characterization and preliminary evaluation

[Term]
id: GCP_323.0000034
name: number of spikelet groups per spike
comment: An average of five typical spikes selected from a growing accession. (Trait subject to fertility and photoperiod factors).  (triplets).
is_a: GCP_323.0000030 ! inflorescence or fruit characterization and preliminary evaluation

[Term]
id: GCP_323.0000035
name: days to flowering
comment: From sowing to when 50% of plants have started flowering. However, in dryland areas when planting in dry soils, it is counted from the first day of rainfall or irrigation, which is sufficient for germination. (Highly dependant on temperature-photoperiod interactions)
is_a: GCP_323.0000030 ! inflorescence or fruit characterization and preliminary evaluation

[Term]
id: GCP_323.0000036
name: lemma type
comment: null
is_a: GCP_323.0000030 ! inflorescence or fruit characterization and preliminary evaluation

[Term]
id: GCP_323.0000037
name: awn colour
comment: null
is_a: GCP_323.0000030 ! inflorescence or fruit characterization and preliminary evaluation

[Term]
id: GCP_323.0000038
name: lemma awn or hood
comment: null
is_a: GCP_323.0000030 ! inflorescence or fruit characterization and preliminary evaluation

[Term]
id: GCP_323.0000039
name: length of rachilla hairs
comment: null
is_a: GCP_323.0000030 ! inflorescence or fruit characterization and preliminary evaluation

[Term]
id: GCP_323.0000040
name: lemma awn barbs
comment: null
is_a: GCP_323.0000030 ! inflorescence or fruit characterization and preliminary evaluation

[Term]
id: GCP_323.0000041
name: glume and glume awn
comment: (outer glumes)
is_a: GCP_323.0000030 ! inflorescence or fruit characterization and preliminary evaluation

[Term]
id: GCP_323.0000042
name: glume colour
comment: null
is_a: GCP_323.0000030 ! inflorescence or fruit characterization and preliminary evaluation

[Term]
id: GCP_323.0000043
name: notes
comment: Any additional information, especially in the category of other under various descriptors above, may be specified here
is_a: GCP_323.0000016 ! plant descriptors characterization and preliminary evaluation

[Term]
id: GCP_323.0000044
name: abiotic stress susceptibility
comment: Scored under artificial and/or natural conditions, which should be clearly specified.
is_a: GCP_323.0000001 ! BarleyDescriptor

[Term]
id: GCP_323.0000045
name: high soil moisture
comment: null
is_a: GCP_323.0000044 ! abiotic stress susceptibility

[Term]
id: GCP_323.0000046
name: lodging
comment: null
is_a: GCP_323.0000044 ! abiotic stress susceptibility

[Term]
id: GCP_323.0000047
name: drought
comment: null
is_a: GCP_323.0000044 ! abiotic stress susceptibility

[Term]
id: GCP_323.0000048
name: shattering prior to harvest
comment: null
is_a: GCP_323.0000044 ! abiotic stress susceptibility

[Term]
id: GCP_323.0000049
name: winter kill
comment: Susceptibility to cold stress measured as a loss of plants in spring (as related to check)
is_a: GCP_323.0000044 ! abiotic stress susceptibility

[Term]
id: GCP_323.0000050
name: sprouting
comment: Tendency of grains to sprout in the ear before harvest as a result of late rainfall
is_a: GCP_323.0000044 ! abiotic stress susceptibility

[Term]
id: GCP_323.0000051
name: awn retention
comment: null
is_a: GCP_323.0000044 ! abiotic stress susceptibility

[Term]
id: GCP_323.0000052
name: high temperature
comment: null
is_a: GCP_323.0000044 ! abiotic stress susceptibility

[Term]
id: GCP_323.0000053
name: low temperature
comment: Damage caused by cold to aerial parts of plants (not associated with death of plants in the winter)
is_a: GCP_323.0000044 ! abiotic stress susceptibility

[Term]
id: GCP_323.0000054
name: reproductive susceptibility
comment: Measured as reduction in seed set at low temperatures or after frost
is_a: GCP_323.0000053 ! low temperature

[Term]
id: GCP_323.0000055
name: salinity
comment: null
is_a: GCP_323.0000044 ! abiotic stress susceptibility

[Term]
id: GCP_323.0000056
name: acidity or aluminium toxicity
comment: null
is_a: GCP_323.0000044 ! abiotic stress susceptibility

[Term]
id: GCP_323.0000057
name: biotic stress susceptibility
comment: In each case, it is important to state the origin of the infestation or infection, i.e. natural, field inoculation, laboratory.
is_a: GCP_323.0000001 ! BarleyDescriptor

[Term]
id: GCP_323.0000058
name: bacteria
comment: null
is_a: GCP_323.0000057 ! biotic stress susceptibility

[Term]
id: GCP_323.0000059
name: bacterial leaf streak
comment: Causal agent: Xanthomonas campestris pv. Translucens
is_a: GCP_323.0000058 ! bacteria

[Term]
id: GCP_323.0000060
name: Xanthomonas campestris pv. Translucens
comment: Bacterial leaf streak
is_a: GCP_323.0000059 ! bacterial leaf streak

[Term]
id: GCP_323.0000061
name: bacterial kernel blight
comment: Causal agent: Pseudomonas syringae pv. Syringae
is_a: GCP_323.0000058 ! bacteria

[Term]
id: GCP_323.0000062
name: Pseudomonas syringae pv. Syringae
comment: Bacterial kernel blight
is_a: GCP_323.0000061 ! bacterial kernel blight

[Term]
id: GCP_323.0000063
name: insect
comment: null
is_a: GCP_323.0000057 ! biotic stress susceptibility

[Term]
id: GCP_323.0000064
name: hessian fly
comment: Causal agent: Mayetiola destructor
is_a: GCP_323.0000063 ! insect

[Term]
id: GCP_323.0000065
name: Mayetiola destructor
comment: Hessian fly
is_a: GCP_323.0000064 ! hessian fly

[Term]
id: GCP_323.0000066
name: english grain aphid
comment: Causal agent: Macrosiphum avenae
is_a: GCP_323.0000063 ! insect

[Term]
id: GCP_323.0000067
name: Macrosiphum avenae
comment: English grain aphid
is_a: GCP_323.0000066 ! english grain aphid

[Term]
id: GCP_323.0000068
name: nematode
comment: Causal agent: null, [parasitic]]
is_a: GCP_323.0000063 ! insect

[Term]
id: GCP_323.0000070
name: russian wheat aphid
comment: Causal agent: Diuraphis noxia
is_a: GCP_323.0000063 ! insect

[Term]
id: GCP_323.0000071
name: Diuraphis noxia
comment: Russian wheat aphid
is_a: GCP_323.0000070 ! russian wheat aphid

[Term]
id: GCP_323.0000072
name: cereal leaf beetle
comment: Causal agent: Oulema melanopus
is_a: GCP_323.0000063 ! insect

[Term]
id: GCP_323.0000073
name: Oulema melanopus
comment: Cereal leaf beetle
is_a: GCP_323.0000072 ! cereal leaf beetle

[Term]
id: GCP_323.0000074
name: greenbug
comment: Causal agent: Schizaphis graminum
is_a: GCP_323.0000063 ! insect

[Term]
id: GCP_323.0000075
name: Schizaphis graminum
comment: Greenbug
is_a: GCP_323.0000074 ! greenbug

[Term]
id: GCP_323.0000076
name: virus
comment: null
is_a: GCP_323.0000057 ! biotic stress susceptibility

[Term]
id: GCP_323.0000077
name: barley yellow mosaic virus
comment: Causal agent: null, [BaYMV]]
is_a: GCP_323.0000076 ! virus

[Term]
id: GCP_323.0000079
name: barley yellow dwarf virus
comment: Causal agent: null, [BYDV]]
is_a: GCP_323.0000076 ! virus

[Term]
id: GCP_323.0000081
name: barley mild mosaic virus
comment: Causal agent: null, [BaMMV]]
is_a: GCP_323.0000076 ! virus

[Term]
id: GCP_323.0000083
name: barley stripe mosaic virus
comment: Causal agent: null, [BSMV]]
is_a: GCP_323.0000076 ! virus

[Term]
id: GCP_323.0000085
name: notes
comment: Specify here any additional information or response to other biotic stresses
is_a: GCP_323.0000057 ! biotic stress susceptibility

[Term]
id: GCP_323.0000086
name: fungi
comment: null
is_a: GCP_323.0000057 ! biotic stress susceptibility

[Term]
id: GCP_323.0000087
name: glume blotch
comment: Causal agent: Septoria nodorum
is_a: GCP_323.0000086 ! fungi

[Term]
id: GCP_323.0000088
name: Septoria nodorum
comment: Glume blotch
is_a: GCP_323.0000087 ! glume blotch

[Term]
id: GCP_323.0000089
name: spot blotch
comment: Causal agent: Cochliobolus sativus
is_a: GCP_323.0000086 ! fungi

[Term]
id: GCP_323.0000090
name: Cochliobolus sativus
comment: Spot blotch
is_a: GCP_323.0000089 ! spot blotch

[Term]
id: GCP_323.0000091
name: septoria leaf blotch
comment: Causal agent: Septoria passerinii
is_a: GCP_323.0000086 ! fungi

[Term]
id: GCP_323.0000092
name: Septoria passerinii
comment: Septoria leaf blotch
is_a: GCP_323.0000091 ! septoria leaf blotch

[Term]
id: GCP_323.0000093
name: scab or head blight
comment: Causal agent: Fusarium graminearum
is_a: GCP_323.0000086 ! fungi

[Term]
id: GCP_323.0000094
name: Fusarium graminearum
comment: Scab or head blight
is_a: GCP_323.0000093 ! scab or head blight

[Term]
id: GCP_323.0000095
name: common root rot
comment: Causal agent: Helminthosporium sativum Fusarium spp.
is_a: GCP_323.0000086 ! fungi

[Term]
id: GCP_323.0000096
name: Helminthosporium sativum
comment: Common root rot
is_a: GCP_323.0000095 ! common root rot

[Term]
id: GCP_323.0000097
name: barley stripe
comment: Causal agent: Pyrenophora graminea
is_a: GCP_323.0000086 ! fungi

[Term]
id: GCP_323.0000098
name: Pyrenophora graminea
comment: Barley stripe
is_a: GCP_323.0000097 ! barley stripe

[Term]
id: GCP_323.0000099
name: scald
comment: Causal agent: Rynchosporium secalis
is_a: GCP_323.0000086 ! fungi

[Term]
id: GCP_323.0000100
name: Rynchosporium secalis
comment: Scald
is_a: GCP_323.0000099 ! scald

[Term]
id: GCP_323.0000101
name: powdery mildew
comment: Causal agent: Erysiphe eraminis f. sp. Hordei
is_a: GCP_323.0000086 ! fungi

[Term]
id: GCP_323.0000102
name: Erysiphe eraminis f. sp. Hordei
comment: Powdery mildew
is_a: GCP_323.0000101 ! powdery mildew

[Term]
id: GCP_323.0000103
name: brown rust, Dwarf leaf rust
comment: Causal agent: Puccinia hordei
is_a: GCP_323.0000086 ! fungi

[Term]
id: GCP_323.0000104
name: Puccinia hordei
comment: Brown rust, Dwarf leaf rust
is_a: GCP_323.0000103 ! brown rust, Dwarf leaf rust

[Term]
id: GCP_323.0000105
name: yellow rust
comment: Causal agent: Puccinia striiformis f. sp. Hordei
is_a: GCP_323.0000086 ! fungi

[Term]
id: GCP_323.0000106
name: Puccinia striiformis f. sp. Hordei
comment: Yellow rust
is_a: GCP_323.0000105 ! yellow rust

[Term]
id: GCP_323.0000107
name: covered smut
comment: Causal agent: Ustilago hordei
is_a: GCP_323.0000086 ! fungi

[Term]
id: GCP_323.0000108
name: Ustilago hordei
comment: Covered smut
is_a: GCP_323.0000107 ! covered smut

[Term]
id: GCP_323.0000109
name: net blotch
comment: Causal agent: Pyrenophora teres
is_a: GCP_323.0000086 ! fungi

[Term]
id: GCP_323.0000110
name: Pyrenophora teres
comment: Net blotch
is_a: GCP_323.0000109 ! net blotch

[Term]
id: GCP_323.0000111
name: black rust
comment: Causal agent: Puccinia eraminis f. sp. Tritici
is_a: GCP_323.0000086 ! fungi

[Term]
id: GCP_323.0000112
name: Puccinia eraminis f. sp. Tritici
comment: Black rust
is_a: GCP_323.0000111 ! black rust

[Term]
id: GCP_323.0000113
name: speckled leaf blotch
comment: Causal agent: Septoria avenae f. sp. Triticea
is_a: GCP_323.0000086 ! fungi

[Term]
id: GCP_323.0000114
name: Septoria avenae f. sp. Triticea
comment: Speckled leaf blotch
is_a: GCP_323.0000113 ! speckled leaf blotch

[Term]
id: GCP_323.0000115
name: loose smut
comment: Causal agent: Ustilago nuda
is_a: GCP_323.0000086 ! fungi

[Term]
id: GCP_323.0000116
name: Ustilago nuda
comment: Loose smut
is_a: GCP_323.0000115 ! loose smut

[Term]
id: GCP_323.0000117
name: cytological characters and identified genes
comment: null
is_a: GCP_323.0000001 ! BarleyDescriptor

[Term]
id: GCP_323.0000118
name: composite cross
comment: null
is_a: GCP_323.0000117 ! cytological characters and identified genes

[Term]
id: GCP_323.0000119
name: genetic stock
comment: null
is_a: GCP_323.0000117 ! cytological characters and identified genes

[Term]
id: GCP_323.0000120
name: mutant stock
comment: Specific trait present based on nomenclature used in the Barley Genetic Newsletter
is_a: GCP_323.0000119 ! genetic stock

[Term]
id: GCP_323.0000121
name: marker allele
comment: Specific gene present following the system of nomenclature used in the Barley Genetic Newsletter
is_a: GCP_323.0000119 ! genetic stock

[Term]
id: GCP_323.0000122
name: others
comment: (specific cytogenetic stocks in descriptor 12.4)
is_a: GCP_323.0000119 ! genetic stock

[Term]
id: GCP_323.0000123
name: near-isogenic line
comment: null
is_a: GCP_323.0000119 ! genetic stock

[Term]
id: GCP_323.0000124
name: aneuploid or polyploid stock
comment: null
is_a: GCP_323.0000117 ! cytological characters and identified genes

[Term]
id: GCP_323.0000125
name: structural rearrangement
comment: null
is_a: GCP_323.0000117 ! cytological characters and identified genes

[Term]
id: GCP_323.0000126
name: duplication
comment: null
is_a: GCP_323.0000125 ! structural rearrangement

[Term]
id: GCP_323.0000127
name: deletion
comment: null
is_a: GCP_323.0000125 ! structural rearrangement

[Term]
id: GCP_323.0000128
name: inversion
comment: null
is_a: GCP_323.0000125 ! structural rearrangement

[Term]
id: GCP_323.0000129
name: others
comment: (specify)
is_a: GCP_323.0000125 ! structural rearrangement

[Term]
id: GCP_323.0000130
name: translocation
comment: null
is_a: GCP_323.0000125 ! structural rearrangement

[Term]
id: GCP_323.0000131
name: other genes present
comment: Gene symbols of other morphological markers present
is_a: GCP_323.0000117 ! cytological characters and identified genes

[Term]
id: GCP_323.0000226
name: Fusarium spp.
comment: Common root rot
is_a: GCP_323.0000095 ! common root rot